|**Scope**| A self-hosted forge for Oxygen repositories: hosting, browsing, review, issues, releases, an HTTP API and webhooks, and the integration point for a runner. It works like GitHub where GitHub is right and differs where the commutative model makes something better possible. |
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|**Depends on**|`oxy-core` and `oxy-server` from the Oxygen workspace (spec Draft 0.8b); `oxy` clients speaking wire protocol version 1 |
18.[Required changes to Oxygen](#18-required-changes-to-oxygen)
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19.[Milestones](#19-milestones)
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20.[Open questions](#20-open-questions)
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21.[Changelog](#21-changelog)
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---
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##1. Goals and non-goals
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1.**Work like GitHub.** A developer who knows GitHub must find repositories, history, diffs, review, issues, releases, tokens and webhooks where they expect them, with the same words where the words still apply. The learning curve is Oxygen's model, not the forge.
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2.**Show what the model makes possible.** Multiple heads, reified conflicts, exact blame, signatures and trust policy, proposals that never go stale, review comments that survive rebases, and approvals that are portable signed objects. Each of these is a first-class page, not a footnote.
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3.**One binary, one directory.**`oxygenhub serve` links `oxy-core`, embeds the wire protocol server, renders its own pages, and keeps everything under one data directory with SQLite for hub state. A backup is a copy of that directory. There is no separate database server, job queue, cache server or front-end build.
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4.**The repository is the source of truth.** Everything about code, history, references, signatures and policy lives in the Oxygen object store and is readable with `oxy` alone. Hub tables hold only what Oxygen has no object for: accounts, sessions, issues, review threads, webhooks and check results. Deleting the hub database loses discussion, never history.
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5.**Off the shelf where it is not the product.** Markdown editing uses EasyMDE, in-browser code editing uses CodeMirror 6, syntax highlighting uses syntect, Markdown rendering uses pulldown-cmark with ammonia sanitising. The hub's own code is the forge logic and the pages.
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6.**Honest state.** A page never shows something the object store does not say. A signature is shown as verified only when the hub verified it against policy; an approval is shown only when the approving seal exists.
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Non-goals for 1.0: hosting Git repositories natively (§14 covers mirrors), a marketplace, wikis, project boards, discussions, GitHub Pages, and federation between hubs. The runner is specified separately (§13, `docs/runner.md`) and is not required for 1.0.
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##2. How it compares with GitHub
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| GitHub | Oxygenhub | Why it differs |
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|---|---|---|
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| Repository, owner, organisation | Same | — |
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| Branch |**Bookmark**| An Oxygen bookmark names a set of heads, not one commit |
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| Commit |**Change**| Changes commute; a change has dependencies, not a parent |
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| Commit page shows one parent diff | Change page shows the change's own edits, its dependencies and its dependents | The diff of a change is intrinsic; it is the same on every bookmark that contains it |
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| Merge, merge commit, rebase before merge |**Landing**: add the proposal's changes to the target bookmark | Union of heads; no merge commit; the result is computed before landing, so CI runs on exactly what lands |
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| Pull request "out of date with base branch" | Never happens; a proposal stays valid as the target moves | Changes commute unless they conflict; a new conflict is shown, not a stale flag |
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| Merge conflict blocks the PR until the author rebases | Conflict is a reified part of the resulting state; the proposal page shows the exact sides, and any collaborator may push a resolution change | Conflicts are values in the model (spec §9) |
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| Review comment on a line, goes "outdated" after a force-push | Review comment anchored to an **atom**`(ChangeHash, index)`, follows the line through rebase, squash and split | Atoms are stable identities; rewrites record correspondences |
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| Approval is a database row | Approval is a **seal** attestation signed by the reviewer's key, stored in the repository | Verifiable offline and after export; survives hub loss |
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| Required status checks on a commit SHA | Required checks on a **state hash**| A state is content addressed, so a green check on the pre-landing state is exactly the check on the post-landing state |
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| Branch protection rules | The repository's **trust policy** (spec §14.5), edited through signed proposals | One authority for who may update a reference, enforced identically by every client and server |
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| Signed commits as a badge | Signature and seal status on every change, with the policy rule that admitted it | Signatures are the protocol, not an add-on |
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| Tags and releases | Tags are signed attestations; releases attach notes and assets | — |
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| Actions | Runner (§13), later | Designed from the failures of Actions and GitLab CI |
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| Fork and PR from a fork | Fork, and proposals from a fork or from a bookmark in the same repository | Same |
| Personal access tokens | Same, scoped | Push also accepts the client's identity signature (§5.4) |
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| Webhooks with HMAC | Same | — |
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| REST and GraphQL APIs | JSON REST only | — |
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##3. Architecture
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###3.1 One process
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`oxygenhub` is a Rust binary in its own Cargo workspace at `../oxygenhub`, depending on `oxy-core` and `oxy-server` by path (developer edition) or by version (release). It runs one tokio runtime with:
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-an axum router serving pages, static assets, the JSON API, and the wire protocol under every repository's path;
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- askama templates compiled into the binary; one hand-written stylesheet, also compiled in and served at `/style.css`;
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- SQLite through `sqlx` (WAL mode, `synchronous=NORMAL`, foreign keys on) for hub state, opened from `<data>/hub.db`;
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- a small background worker pool (tokio tasks) for webhooks delivery, notification email, search indexing, Git mirror export and cache warming;
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- an in-process cache (§16).
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There is no separate front-end build. JavaScript is limited to: the theme cookie, EasyMDE (Markdown editing), CodeMirror 6 (file editing), and small progressive enhancements (history graph hover, keyboard shortcuts, live check status). Every page MUST render and every form MUST work with JavaScript disabled, except the two editors, which degrade to a plain `<textarea>`.
assets/<owner>/<name>/ release assets, content addressed by BLAKE3
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cache/ rebuildable: rendered pages, graph layouts, search index
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```
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`<owner>` and `<name>` MUST match `[A-Za-z0-9][A-Za-z0-9._-]{0,63}` and MUST NOT be `.`, `..`, or end in `.git` (reserved for the mirror URL). The reserved top-level path segments are `api`, `static`, `login`, `logout`, `register`, `settings`, `explore`, `search`, `notifications`, `new`, `orgs`, `admin`, `style.css`, `favicon.ico`, `favicon.svg`, `health`; no owner may take those names.
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###3.3 Request path
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1.Middleware: request id, tracing span, body limits, session cookie decode, CSRF check on unsafe methods (§15.2), rate limits (§15.6).
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2. Wire protocol routes `/{owner}/{name}/oxy/v1/*` go to the embedded `oxy-server` handlers with the hub's repository resolver and authorizer (§18).
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3. Page and API handlers resolve `{owner}/{name}` to a `RepoHandle`, check the viewer's role, and run every `oxy-core` call inside `spawn_blocking` under the repository's read-write lock (§16.2).
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4. Templates receive plain structs; no template touches `oxy-core` directly.
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###3.4 Crate layout
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```
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oxygenhub/
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Cargo.toml workspace: crates/hub (binary), crates/hub-api (types shared with clients)
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crates/hub/src/
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main.rs CLI: serve, init, admin (§17.3)
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config.rs hub.toml and environment
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db/ sqlx migrations and queries, one module per table group
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repos/ RepoHandle, locks, cache, bare repository operations
templates/ askama; base.html, style.css, one file per page
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assets/ wordmark, favicons, vendored EasyMDE and CodeMirror bundles
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migrations/ sqlx migrations
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docs/ this file, runner.md, deploy.md
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```
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##4. Repositories on the server
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###4.1 Bare repositories
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A hosted repository is an Oxygen repository directory with no working copy checked out and no user workspace. `oxy-core` today always keeps one working-copy change per workspace; the hub never snapshots, commits from a checkout, or touches files outside `.oxy/`. The directory contains only `.oxy/`. §18 lists the small change that lets `Repo::open` skip working-copy bookkeeping for such a directory.
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Creation: `Repo::init` under `<data>/repos/<owner>/<name>` with a fresh repository id, then an initial row in `repositories`. Import: a client `oxy push` into an empty hub repository; or, for Git, §14.
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Deletion moves the directory to `<data>/trash/<owner>/<name>-<timestamp>` and a job removes it after `trash_days` (default 30). Renames are a directory move under the repository's write lock plus a `redirects` row so old URLs resolve for 90 days.
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###4.2 Forks
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A fork copies the object store (hard links where the file system allows, otherwise a copy) and records `forked_from`. Because objects are content addressed and repository ids differ, a proposal from a fork carries the changes across repositories by hash; the hub fetches missing objects from the fork's store directly, never over the network.
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###4.3 The default bookmark
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Each repository has a default bookmark (`main` unless changed). It is what the repository page, tree, file views and search show, and the target every proposal picks first.
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###4.4 Visibility
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`public` (readable by anyone including anonymous clients), `internal` (readable by every signed-in account), `private` (readable by collaborators). Wire protocol reads obey the same rule: a private repository answers `404` to an unauthorized client, not `401`, so its existence is not disclosed.
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##5. Accounts, identities and authorization
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###5.1 Accounts
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An account has a username (same grammar as an owner name), a display name, an email (verified before it is used for anything), an Argon2id password hash, an optional TOTP secret, a session salt (rotating it signs out every session), and a set of linked Oxygen identities (§5.3). The first account created becomes the site administrator. Registration is open, invitation only, or closed, per configuration.
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Sessions are a signed cookie `oxyhub=<username>.<mac>` where `mac = HMAC-SHA256(cookie_key, "session:" || username || ":" || session_salt)`, `HttpOnly`, `Secure` when served over HTTPS, `SameSite=Lax`. Password changes and "sign out everywhere" rotate the salt. Passkeys (WebAuthn) are planned for 1.0 as a second factor or password replacement.
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###5.2 Organisations and teams
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An organisation is an owner with members and teams. Roles on an organisation: `owner`, `member`. Roles on a repository, whether personal or organisational: `read`, `triage` (manage issues and proposals without writing), `write`, `maintain` (settings except deletion and secrets), `admin`. Teams hold members and receive repository roles as a unit. An organisation's default repository role for members is configurable.
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###5.3 Linked identities
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An Oxygen identity is a signed object holding an Ed25519 + ML-DSA-65 key pair's public halves (spec §14.2). An account links an identity by uploading the identity object (`oxy identity export`) and proving possession: the hub issues a 32-byte challenge and the client signs it with `oxy identity sign-challenge` (§18); the hub verifies both signatures. A linked key is what makes a pushed change *this account's* change: author attribution in every page comes from the change's signing key, not from who held the token that pushed it. A change signed by an unlinked key shows its KeyId and "unlinked key" rather than a user name.
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An identity can be linked to at most one account. Rotation (`oxy identity rotate`) produces a new identity whose object names the old key; the hub accepts the rotated identity for the same account without a new challenge when the rotation is signed by the old key.
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###5.4 Authentication for the wire protocol
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`push` requires one of:
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1.`Authorization: Bearer <token>` with a personal access token holding `repo:write` on that repository;
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2. an HTTP signature (spec §15.1): the client signs a server challenge with its identity key and the key is linked to an account with `write`. Reference implementation support is a §18 item; until then tokens are the only method.
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Reads on `public` repositories are anonymous. Reads on `internal` and `private` repositories require the same credentials with `repo:read`.
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###5.5 Two authorities, one answer
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The hub's roles decide who may reach a repository, open issues, create proposals, edit settings, and *attempt* a push. The repository's Oxygen trust policy (spec §14.5) decides which keys may update which references and whether conflicts may land on them. Both must agree for a push to succeed; the hub MUST NOT bypass or reimplement policy, and it MUST run the same `receive_push` validation `oxy-core` runs everywhere else.
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A repository with no policy accepts any reference update from any account with `write`. The settings page says so plainly and offers to create a policy. Policy editing in the browser produces a **policy proposal**: a signed policy object that roots sign with `oxy policy sign` from their own clients; the hub collects signatures until the threshold is met, then applies the update as an ordinary push. The hub never holds a root key.
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The hub has one identity of its own, the **hub delegate key**, generated at `init` and published at `/.well-known/oxyhub-key`. It is used only to sign changes the hub itself creates on behalf of a signed-in user (web edits, §6.9; proposal landings, §7.6). Such a change carries the user's linked key as `author` and the hub key as signer, which the author-or-delegate rule (spec §14.4) accepts only when the user's identity object lists the hub key as a delegate: the user opts in once with `oxy identity delegate add <hub key>` and re-links the rotated identity (§5.3). Policy is then checked exactly as for the user's own signature, since a rule that names the author covers the author's delegates (spec §14.5). If the user has not delegated, or the policy does not authorise them for the reference, the hub refuses the action and shows the client recipe. Delegation is per user and revocable by the user alone (`oxy identity delegate remove`); the hub never needs a policy entry of its own.
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###5.6 Personal access tokens
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Tokens are 32 random bytes, shown once, stored as BLAKE3 hashes, with a name, an optional expiry, and scopes: `repo:read`, `repo:write`, `repo:admin`, `issues:write`, `proposals:write`, `user:read`, `hooks:admin`, optionally restricted to listed repositories. Tokens authenticate the API and the wire protocol; they never authenticate the pages.
The visual language follows the RetroPlay Network's shape (dark by default, `Barlow` for text and `Press Start 2P` for the wordmark and first columns, square corners, thin `--line` rules, a `--panel` header and footer, a full-width `--band` navigation bar with the active tab underlined in `--acc`) with the palette taken from the Oxygen mark shared with the VS Code extension: the mark's cyan `#00F0FF` to blue `#0072FF` gradient on `#070c18`, so `--acc` is cyan, `--acc-2` blue, and the band a deep blue. The mark itself is the logo in the header, the footer and the favicon; the wordmark beside it reads OXYGEN**HUB**. The stylesheet starts from `retroplay-manager/templates/style.css` lines 1–171 (tokens, shell, band, tabs, main, tables, forms, footer) and adds forge components; the store, showcase and game components are not carried over.
The theme is dark, light, or auto (follow the system's `prefers-color-scheme`, and change with it), chosen with the switch in the header (it cycles) or under Settings → Appearance, and kept in a `theme` cookie for a year; dark when unset. A script in the page head applies it before first paint. Syntax highlighting uses the highlighter's scope names as classes prefixed `sy-`, so no scope can collide with the page's own classes.
--ok --bad --warn (new: #ffb347 dark / #b8651b light)
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--add --del --add-ink --del-ink (new: diff backgrounds and text)
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--m1 … --m5 (kept for signature status colours: root, signed, sealed, unsigned, invalid)
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```
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Theme selection: cookie `theme=light|dark|auto`; `auto` follows `prefers-color-scheme`. The `<head>` sets `data-theme` before paint exactly as retroplay-manager does. Fonts are vendored under `/static/fonts/` rather than loaded from Google, so a hub on a private network paints without internet access.
The logo is `assets/icons/oxygenhub.svg`, a copy of the extension's `oxygen.svg` (two linked rings, the molecule), inlined in the header at 22px beside the wordmark.
`header` (wordmark, global search box, "+" menu for new repository/issue/proposal, notifications bell with unread count, avatar menu) · `.band` (Repositories · Explore · Proposals · Issues · Notifications, with admin links pushed right) · repository `.tabs` (Code · Changes · Proposals · Issues · Releases · Trust · Settings, each with a count pill) · `main` at 1180px max (wider than retroplay's 980 because diffs need it; tree and file pages use 100% with 22px gutters) · `footer`.
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Every page has a `<title>` of the form `<thing> · <owner>/<name> · Oxygenhub`.
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###6.3 Pages
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| Path | Page |
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|---|---|
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|`/`| Signed in: dashboard (your repositories, proposals awaiting your review, assigned issues, recent activity). Anonymous: explore. |
|`/explore`| Every repository the viewer may see; `q` filters by name, description or topic, `topic` by one topic, `sort` is `activity` (default), `stars` or `name`; each row shows its topics and stars. Topics are set under repository settings (letters, digits and dashes, at most 20); anyone signed in can star a repository, and the overview shows star and watcher counts |
|`/{owner}`| A person: identicon, display name, bio, location, website, linked signing keys, organisations, repositories the viewer can see, and their recent activity (never the email). An organisation: identicon, description, members with roles, teams with sizes, repositories, recent activity in them. `/avatar/{name}` serves the identicon (SVG, a mirrored 5×5 pattern and hue from BLAKE3 of the lower-cased name). |
|`/{owner}/{name}`| Repository overview (§6.4); while empty, a quickstart with the exact commands for this hub (remote, certificate, token, push; start from nothing; import from Git) |
|`/{owner}/{name}/fork`, `/{owner}/{name}/forks`| Fork under an owner the viewer may create repositories for (same visibility, own repository id, objects hard-linked, bookmarks copied, policy not copied); the list of forks the viewer can see. The overview shows "forked from", the fork count, and on a fork a link that opens a proposal upstream with `owner/name:bookmark` as its source |
|`/{owner}/{name}/tree/{ref}/{path}`| Directory listing at a bookmark, tag, change or state (§6.5). A `{ref}` is a bookmark name, a tag name, a change hash or unique prefix, or a state: full change hashes joined with `+` (`a1…+b2…`), the state those heads make, which is how a state with several heads is addressed permanently |
|`/{owner}/{name}/compare/{a}...{b}`| Changes in `b` not in `a`, and the diff between the two states. Each side is picked from the bookmarks and tags, or typed as a change or state; a swap link reverses them. When both are bookmarks, `b` has changes `a` lacks and the viewer can write, **Propose this** opens a new proposal of `b` into `a` (or links the one already open). `/compare` alone compares the most recently changed other bookmark against the default one; `/compare?base=…&head=…` is the pickers' form |
|`/{owner}/{name}/proposals`, `/proposal/{n}`| §7. The list filters by state and by `q` (`author:`, `label:`, `target:` and words), sorts by recently updated (default), newest or oldest, and pages 25 at a time |
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|`/{owner}/{name}/issues`, `/issue/{n}`| §8. The list filters by state and by `q` (`author:`, `label:`, `assignee:`, `milestone:` and words), sorts by newest (pinned first, default), oldest, recently updated or most comments, and pages 25 at a time. The Proposals and Issues tabs show how many are open |
|`/help`| Getting started with this hub's own address, remote name and certificate filled in (identity, pushing, cloning, proposals, delegating to the hub, pipelines and stamps), the keyboard, and a glossary for people coming from GitHub. Linked from the header band, the footer and the keyboard sheet |
The default bookmark's tree at the root, the rendered `README.md` (or `README`, `README.txt`) below it, and a right column: description and topics, clone URL with copy button (`oxy clone https://…/{owner}/{name}`), heads count with a link when more than one, bookmarks, tags, latest release, collaborators, license detected from `LICENSE`, and the trust badge: **policy**, **no policy**, or **policy expired**.
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A repository whose default bookmark has more than one head shows a `--warn` strip: "main has 3 heads; the tree below is their union" with a link to the bookmarks page. Conflicts in that state show a `--bad` strip linking to the conflicts page.
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###6.5 Tree
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Directory rows show name, the last change touching the entry (message and relative time, from `log_for_path`, computed lazily per row over the API so a large directory paints immediately), size, and mode glyphs (executable, symlink, subrepository). A subrepository row links to its pin: another hub repository at a state, or a Git URL at a SHA.
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###6.6 File view and blame
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Text files render with syntect line highlighting, line numbers as anchors (`#L12`, `#L12-L20` selects a range), a "raw", "history", "blame", "edit" toolbar, and the file's last change. Markdown renders by default with a toggle to source. Images and PDFs render inline; other binaries offer download. Files above `render_limit` (default 2 MiB) show the first part and a download link.
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Blame uses `Repo::blame`: every line is exact, because each line is an atom with one authoring change. The gutter shows the change's short hash, author and age, grouped into runs, with the change's signature glyph. Blame is exact through rebase and squash, so there is no "ignore revs" file.
A sidebar beside the file lists the tree down to it: the root and each directory on the file's path expanded (at most 200 entries each, then a link to the directory), the file marked, other directories linking to their tree pages. It is hidden on narrow screens.
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The permalink of a file view is the same path at its state: the target's heads joined with `+` in place of the bookmark or tag. `y` replaces the address with the permalink, keeping the line anchor, as GitHub does. When a line or range is selected, a bar offers **Copy lines** (the text) and **Copy permalink** (the permalink with `#L12-L20`).
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The blame gutter shades each run by the age of its change, from the file's oldest (lightest) to newest (strongest) line, in ten steps, with the age also written out so colour is not the only carrier. Each run links **blame before this change**: the same file blamed at the state of the change's dependencies (the state its author built on), so a line can be traced back through every edit. A change without dependencies has no such link; one with more than 32 has none either, to keep addresses bounded.
A dependency graph, not a parent chain. The default view lists the bookmark's changes newest first with lanes drawn between a change and its dependencies (the same layout algorithm as the VS Code extension's webview, ported to Rust and rendered server side as SVG). Heads are marked. Filters: author, path, date, signed/unsigned, message text. Each row: short hash, message first line, author (name, or KeyId when unlinked), relative time, signature glyph, bookmark and tag chips, a conflict chip when the change introduces one.
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`?path=` gives the history of one path.
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###6.8 Change page
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Header: full hash, message, author identity (linked account or KeyId), timestamp, signature status with the policy rule that admitted it (or "unsigned", or "invalid"), seals covering it, the bookmarks and tags containing it. Body: dependencies and dependents as chips, the change's edits as a diff (unified or split, per-user preference), atom counts, and the raw change (`oxy show --json`) behind a details block.
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Actions for `write`: open a proposal containing this change, tag it, copy hash. Describing, abandoning, squashing and rebasing are client operations and are not offered here.
Every diff (change, compare, proposal files) shows each file as a collapsible section, open unless it has more than 400 rows. Within a block of changed lines, removals come first and each is paired with the addition in the same position; a pair similar enough (at least 40% of its tokens shared, tokens being identifiers, whitespace runs and single other characters) marks the tokens that changed. `?w=1` hides whitespace-only changes: a pair equal once whitespace is removed is shown as one unchanged line. With scripts, a toolbar switches between unified and split (side by side, pairs opposite each other) views, remembered in a `diff` cookie, and collapses or expands every file.
`CodeMirror 6` with the file's language mode. Saving creates a change with the given message signed by the hub delegate on behalf of the user (§5.5) and adds it to the chosen bookmark, or to a new bookmark plus a proposal, exactly as GitHub's "propose changes" flow. The hub refuses with a clear message when the user has not delegated to the hub key (§5.5) or the policy does not authorise them for the target. Binary files and files over `render_limit` cannot be edited in the browser.
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###6.10 Conflicts page
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For each bookmark whose state has conflicts: the file (or tree entry), the conflict kind, and each side with the change that produced it and its content, rendered with the same marker structure `oxy checkout` writes. A "resolve in browser" action opens the file's conflict markers in the editor (§6.9) and commits a resolution change through the delegate. Otherwise the page gives the two-line client recipe.
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###6.11 Trust page
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The current policy (serial, expiry, roots, threshold, rules with their patterns, thresholds and `allow_conflicts`), the policy history, the hub delegate key with its fingerprint and which collaborators have delegated to it, every linked account's keys that the policy names, revoked keys, and a verification summary computed from `oxy verify`: counts of signed, sealed, unsigned and invalid changes, with a list of invalid ones. Policy proposals awaiting root signatures are listed with who has signed and a download of the proposal file.
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###6.12 Pushes page
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The hub keeps its own log of every reference update it accepted or refused: time, account, key, reference, old and new state, force flag, the result and reason. This is the answer to "who moved main and when" and is the hub's audit trail for history; it is not the repository's operation log, which is per workspace.
`/` focuses search, `g c` / `g p` / `g i` jump to Code, Proposals, Issues, `y` on a tree or file page switches to its permalink, `?` shows the sheet. Every interactive element is reachable by keyboard; colour is never the only carrier of meaning (glyphs accompany every status colour); contrast meets WCAG AA in both themes.
A **proposal** is a request to add a set of changes to a target bookmark of a repository. It is identified by a per-repository number, like a pull request. Its source is either a bookmark of the same repository or of a fork, in which case the proposal's changes are those in the source bookmark's state not in the target's; or an explicit list of change hashes (from the change page or the API).
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A proposal records: number, title, description (Markdown), author, target bookmark, source (bookmark and repository, or explicit hashes), state (`draft`, `open`, `landed`, `closed`), reviewers requested, labels, and the **projected state** (§7.2).
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###7.2 Projected state
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Whenever the proposal or its target changes, a job computes the projected state: the union of the target's heads and the proposal's changes, loaded through `oxy-core` exactly as a client's `oxy merge` would. From it the page shows:
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-the changes to be added, in dependency order, with signature status;
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- the diff between the target's state and the projected state;
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-**conflicts** the landing would reify, each with its sides, in the same rendering as §6.10;
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- files touched, and check results for the projected state hash (§13).
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Because changes commute, a projected state is stale only when the target has moved; the job then recomputes it. There is no "update branch" button because there is nothing to update. If the recomputation shows a new conflict, the proposal is marked `conflicted` and the author and reviewers are notified.
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###7.3 Review comments
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A comment is attached to the proposal (general), to a file, or to an **atom**: `(ChangeHash, index)` plus the change that introduced the line. Rendering places it at the atom's current position in the projected state; if the atom is gone (deleted by a later change in the proposal), the comment shows in the file's "resolved lines" section rather than disappearing. When the author squashes or rebases, the correspondence the rewrite recorded maps the old atom to the new one, and the comment follows. Comments are Markdown (EasyMDE), threaded, and resolvable.
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###7.4 Reviews and approvals
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A review is `comment`, `request changes`, or `approve`. An approval MUST be backed by a **seal attestation** (spec §14.4, `kind = seal`) over the proposal's change hashes, signed with a key linked to the reviewer's account. Private keys never enter the browser, so the reviewer signs from a client: `oxy seal --proposal <url>` or `oxy seal <hashes>` (§18, a new command; the seal object already exists in the model) signs and pushes the seal; the hub matches the seal to the proposal and records the approval. The page shows the command ready to copy. An approval not yet backed by a seal is shown as "approval pending signature" and does not count towards requirements.
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Landing requirements per repository (settings): N approvals, approvals from code owners (`.oxyowners` in the target state, GitHub `CODEOWNERS` syntax), required checks green on the projected state, no conflicts (or conflicts allowed, matching the policy rule's `allow_conflicts`), and no outstanding "request changes".
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###7.5 Stacked proposals
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A change may depend on changes in another open proposal. The page shows "depends on #12" and lands only after #12 has landed, or lands both when the user chooses "land with dependencies" and holds the rights for each.
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###7.6 Landing
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Landing sets the target bookmark to the projected state's heads: a reference update with a fresh ref attestation. It is performed by:
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1.the hub delegate key on behalf of the user landing, when that user has delegated to it (§5.5), the policy authorises them for the target, and they hold `write`; or
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2. a client: `oxy proposal land <url>` (§18) fetches the proposal's changes, sets the bookmark locally and pushes with the user's own key. The hub notices the push, sees the proposal's changes are now in the target, and marks it `landed`.
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The landed state hash is recorded. Nothing is rewritten: the changes keep their hashes, so links to them stay valid and check results carry over. "Squash on land" is offered as a client-side option only, since it rewrites signed changes.
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###7.7 Closing and reopening
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`closed` keeps everything; the source bookmark may be deleted on close if the user asks. A proposal whose changes all appear in the target through another route is marked `landed` automatically with a note.
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##8. Issues
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Per-repository numbered issues sharing the number space with proposals (as GitHub does), with title, Markdown body, author, assignees, labels (name, colour, description), a milestone (title, due date, description, open/closed), state (`open`, `closed` with reason `completed` or `not planned`), comments, lock, and pin. Issue templates come from `.oxyhub/ISSUE_TEMPLATE/*.md` in the default state.
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Cross references: `#12` links an issue or proposal; `owner/name#12` across repositories; a 12-hex-or-longer token links a change when it resolves; `closes #12` in a change message closes the issue when the change lands on the default bookmark. Every reference creates a timeline entry on the target.
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Import from GitHub or GitLab is a 1.x item.
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##9. Releases and tags
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Tags come from the repository (spec §10): a name, the state, and a signed attestation when the tagger signed. The tags page lists them with signature status. A release attaches to a tag: notes (Markdown, generated draft from the changes since the previous release), assets (uploaded files, content addressed, size limited by `asset_limit`), a pre-release flag, and a latest marker. Source archives (`.tar.zst`, `.zip`) of the tagged state are generated on demand and cached.
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##10. Notifications
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Events: proposal opened, review requested, review submitted, comment on a thread you are in, mention (`@name`), landing, check failed on your proposal, issue assigned, policy proposal awaiting your signature, push refused. Each becomes an inbox item (`/notifications`, with unread count in the header) and, when the account chooses, an email through `lettre` with a per-account SMTP-independent unsubscribe link. Watching a repository subscribes to all its events; participating in a thread subscribes to it.
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##11. Search
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Global search box with scopes: repositories (name, description, topics), issues and proposals (FTS5 over title, body and comments), changes (message FTS5 over the default bookmark's state, indexed on push), accounts, and code. Code search in 1.0 is a per-repository substring and regular-expression search over the default state's text files, run with a time budget and a result cap, cached per state hash. A trigram index is a 1.x item.
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##12. HTTP API and webhooks
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###12.1 API
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JSON under `/api/v1`, bearer tokens, `application/json`, RFC 7807 problem responses, cursor pagination (`?after=`), ETags on cacheable resources, and rate limits per token. Resources mirror the pages: `/repos/{owner}/{name}`, `/bookmarks`, `/changes/{hash}`, `/tree/{ref}/{path}`, `/file/{ref}/{path}`, `/blame`, `/history`, `/compare`, `/conflicts`, `/proposals`, `/proposals/{n}/comments|reviews|checks|land`, `/issues`, `/labels`, `/milestones`, `/releases`, `/tags`, `/trust`, `/pushes`, `/hooks`, `/checks`, `/user`, `/users/{name}`, `/orgs/{name}`, `/search`. Shapes reuse `oxy --json` shapes wherever one exists (change, status, blame, diff) so tools written against the CLI work against the hub. `crates/hub-api` holds the types with `serde` derives and is what the runner and the VS Code extension will link.
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###12.2 Webhooks
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Per repository and per organisation: a URL, a secret, an event selection, active flag, and delivery log with redelivery. Payloads are JSON with `X-Oxyhub-Event`, `X-Oxyhub-Delivery`, and `X-Oxyhub-Signature: blake3-keyed=<hex>` computed as keyed BLAKE3 over the body. Events: `push` (reference updated: old and new state, heads, changes), `proposal` (opened, edited, review requested, landed, closed, conflicted), `review`, `comment`, `issue`, `release`, `check`, `policy`. Deliveries retry with backoff up to 24 hours.
A **check** is a result attached to a state hash: name, status (`queued`, `running`, `passed`, `failed`, `cancelled`, `skipped`), a summary, a URL, timing, and an optional signed **seal** from the checker's key over the changes in that state, which makes a passed check a verifiable object. Checks are created through the API (`POST /repos/{o}/{n}/checks`) by any token with `checks:write`, so any CI system can report, and required checks for landing (§7.4) are matched by name against the projected state's hash. The proposal page streams check status updates over server-sent events.
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Because a state is content addressed, the hub deduplicates: a check that passed for a state hash is shown for every proposal and bookmark that reaches that same state.
Pipelines run in **OxygenFlow**, a separate project and specification (`oxygenflow/docs/spec.md`; the first slice is `oxygenflow/docs/m0.md`). A pipeline is `.flow/pipeline.kdl` in the state being built; jobs run in Flow's isolation tiers (MicroVM by default, a syscall sandbox, WASM), never in containers on the hub. The hub's side:
-**Configuration.**`[flow] runner_tokens` (bearer tokens for runners, compared in constant time), `repos` (patterns such as `owner/*` or `owner/name`: the repositories whose pushes start runs; empty means none) and `job_timeout_minutes` (60).
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-**Triggers.** A push that moves a bookmark of an allowed repository starts a **run** on the bookmark's new state: the hub reads `.flow/pipeline.kdl` from that state and validates it with `flow-core` (the same code `flow check` runs). An invalid pipeline records a run in `error` with the problems and their lines; a state without a pipeline records nothing. Tags and proposals start no runs yet, so only code from people with write access ever runs.
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-**Runs and jobs.** A run holds the repository, bookmark, state hash and heads, pipeline hash and pusher; one job per pipeline job with its compiled form, sandbox and dependencies. Job states: `queued`, `running`, `passed`, `failed`, `skipped` (a dependency did not pass), `error` (the runner could not run it). A run is `running` while any job is, then `passed` when every job passed, else `failed`.
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-**Runner API** (runner token): `POST /api/v1/flow/claim` hands out the oldest queued job whose dependencies passed and whose tier the runner offers, marking it `running`, with a **job token**; `204` when there is none. `POST /api/v1/flow/jobs/{id}/log` appends log records (text cut at 16 KiB, at most 50 000 per job); `POST /api/v1/flow/jobs/{id}/finish` records the exit code and receipt (the hub recomputes the receipt hash) and settles dependents. Only the runner holding the job may report on it.
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-**Job tokens.** Random, stored as a hash, valid only for reading the job's repository over the wire protocol while the job is running and for at most two hours. They cannot push, call the API or read other repositories.
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-**Checks.** Each job is also the check `flow/<job>` on the run's state (§13.1), so proposals, required checks and the editor's status bar see it.
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-**Pages.** A **Flow** tab lists runs (status, bookmark, state, pusher, when, duration). A run page draws the job graph as SVG, with columns by dependency depth and status by colour and glyph, and each job's log below (folded, the failed ones open); it refreshes while the run is live. Readers of the repository can see both.
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The older runner draft (`docs/runner.md`) is superseded by OxygenFlow; its hub-side ideas (environments, approvals for outsider proposals, caches, artifacts) carry over as later Flow milestones.
A repository may enable a **Git mirror**: on every landing on selected bookmarks the hub runs `oxy git export` into `<data>/mirrors/<owner>/<name>.git` and serves it read-only over Git's smart HTTP protocol at `/{owner}/{name}.git` (implemented with the `git` binary's `http-backend` behind the hub's authorization, since reimplementing pack negotiation is not the product). This lets GitHub Actions runners, IDEs and tooling that only speak Git read hosted Oxygen repositories. Pushing to a mirror is refused with a message pointing at `oxy`.
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Import from Git: `oxy git import` at repository creation from an uploaded bundle or a URL, keeping the mapping so later `oxy git fetch` keeps the imported bookmark following the Git branch.
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##15. Security
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###15.1 Threat model
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An anonymous internet user, a signed-in user attempting to exceed their role, a collaborator with `write` attempting to move a reference the policy forbids, a malicious repository content author (Markdown, file names, huge objects), and a compromised hub host. The last is bounded by design: the hub holds no root keys, approvals are user-signed seals, history is signed by authors, so a compromised hub can deny service and forge hub-only data (issues, comments) but cannot forge history, approvals or policy without detection.
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###15.2 Web
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CSRF: every unsafe form carries a token bound to the session (`HMAC(cookie_key, "csrf:" || session mac)`), and the `Origin` header is checked when present. Cookies are `HttpOnly`, `SameSite=Lax`, `Secure` over HTTPS. Content Security Policy: `default-src 'self'`, no inline scripts except the theme snippet by hash, `img-src 'self' data:`; rendered Markdown is sanitised by ammonia with an allow-list; rendered HTML files are never served inline (raw file responses use `Content-Disposition: attachment` and `X-Content-Type-Options: nosniff`) except images with sniffed, allow-listed types. Path parameters are validated before touching the file system; paths inside repositories are resolved against the object store, never the disk.
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###15.3 Passwords, sessions, tokens
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Argon2id with the defaults of the `argon2` crate, per-password salt; TOTP with a 30-second step and one-step drift; recovery codes; sessions as in §5.1; tokens stored as BLAKE3 hashes and compared in constant time; login rate limited per account and per address; all session-changing actions logged in the audit log.
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###15.4 Repository content
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Object sizes are bounded by the wire protocol server's body limits (per push and per object); rendering is bounded by `render_limit` and by time budgets; archives are streamed; symlinks in trees are shown, never followed on the server; subrepository pins are displayed, never fetched by the hub.
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###15.5 Keys and TLS
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The hub delegate key lives in `<data>/keys/` with mode `0600`. Its identity object is published at `/.well-known/oxyhub-key` so policy holders can admit it. TLS: the hub serves HTTPS itself with the configured certificate, or plain HTTP behind a terminating proxy, or on the developer edition a self-signed certificate it generates at `init` (with `rcgen`) whose CA is downloadable from the trust page and usable with `OXY_CA`.
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###15.6 Rate limits and abuse
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Per address for anonymous requests, per account and per token otherwise, with separate budgets for pages, API, search and the wire protocol; registration and login have their own. Administrators can ban accounts and block addresses.
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##16. Performance and caching
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###16.1 Targets
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Repository overview and tree pages in under 100 ms on a warm hub for a repository of 100 000 changes; a change page in under 200 ms; a projected state for a 50-change proposal in under 2 s; wire protocol throughput limited by disk and network, not the hub.
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###16.2 Locks and blocking
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Every `oxy-core` call runs on the blocking pool. Each repository has a `tokio::sync::RwLock`: pushes, landings, web edits and mirror exports take the write lock; page reads take the read lock. `oxy-core` itself is single-threaded per `Repo`, so a `Repo` is opened per request and dropped after; store handles are cheap to open because packs are memory mapped.
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###16.3 Caches
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Keyed by state hash, so they never go stale: loaded `State` objects (LRU by memory), tree listings, rendered file views, blame, history graph layouts per bookmark head set, projected states per proposal, archives, code search results. Keyed by object hash: rendered Markdown, syntax highlighted files. Keyed by repository: bookmark and tag lists, invalidated by the push path. `ETag` and `Cache-Control: private, max-age=0, must-revalidate` on pages; `immutable` on content-addressed responses (raw files by hash, archives by state).
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###16.4 Large repositories
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History pages paginate by cursor; the graph renders a window of 100 changes with lazy extension; `log_for_path` for tree rows is fetched per row after the page paints and cached per (state, path). The projected state job uses `load_state` on the target and applies only the proposal's changes on top.
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##17. Operations: configuration, storage, backup
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###17.1 Configuration
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`hub.toml` in the data directory; every key overridable by `OXYHUB_<SECTION>_<KEY>`:
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```toml
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[server]
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bind = "0.0.0.0:7300" # plain HTTP
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tls_bind = "0.0.0.0:7343" # HTTPS, when tls.cert and tls.key (or self_signed) are set
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base_url = "https://earth.andymccall.xyz:7343"
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behind_proxy = false # trust X-Forwarded-* when true
SQLite in WAL mode; migrations embedded and applied at start; `PRAGMA user_version` guards downgrades. Repositories are ordinary Oxygen repositories; `oxy gc` runs per repository as a nightly job with the retention the repository settings choose.
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###17.3 Command line
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```
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oxygenhub init --data DIR [--admin NAME] create the data directory, keys, database, first admin
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oxygenhub serve --data DIR run
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oxygenhub admin --data DIR user|repo|token … offline administration
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oxygenhub backup --data DIR --to FILE consistent snapshot: sqlite backup API plus repos and assets as tar.zst
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oxygenhub check --data DIR verify every repository's objects and signatures, report
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```
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###17.4 Backup and restore
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`backup` uses SQLite's online backup API for the database and copies `repos/`, `assets/`, `keys/` and `hub.toml`; `cache/` is excluded. Restore is extraction plus `serve`. Because objects are content addressed, a repository directory copied while a push is in flight is still valid up to its last committed reference update.
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###17.5 Developer edition on Earth
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Earth (`earth.andymccall.xyz`, Ubuntu 26.04, x86_64, 4 cores, 31 GiB, Docker, ports 22, 6400, 6670, 7842, 8080 in use) runs the developer edition as a systemd service under a dedicated `oxygenhub` system user with `<data> = /home/oxygenhub/data`, HTTP on 7300 and HTTPS on 7343 with a self-signed certificate. Source is synchronised from the development machine with `rsync` (the Oxygen workspace and the hub) and built on Earth with a rustup toolchain installed for the `claude` account; `docs/deploy.md` gives the exact steps. Once the hub runs, `oxygen`, `oxygen-vscode` and `oxygenhub` are pushed to it as its first repositories and become their own remotes; that fulfils the self-hosting rule without any Git involvement.
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##18. Required changes to Oxygen
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Each is small and lives in the Oxygen workspace, tracked in its `docs/plan.md`:
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1.**Bare repositories.**`Repo::open_bare(dir)`: open a `.oxy/` with no workspace; refuse working-copy operations with a clear error. `oxy init --bare`.
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2.**Server embedding.**`oxy-server` exposes `router_with(resolver, authorizer)` where the resolver maps a path (possibly `owner/name`) to a repository directory and the authorizer decides read and push per request, so the hub embeds it instead of copying handlers. Repository names with one `/` allowed when the resolver permits.
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3.**Challenge signing.**`oxy identity sign-challenge <bytes>` and `oxy_core::identity::verify_challenge`, for linking keys (§5.3) and HTTP signature authentication (§5.4).
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4.**Seal command.**`oxy seal <hash>..` signs a seal attestation over the given changes with the identity key and pushes it on the next push (the seal object and its verification exist, spec §14.4; today only the sync path creates seals). `oxy seal --proposal <url>` fetches the hash list from the hub API first.
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5.**Landing from a client.**`oxy proposal land <url>` and `oxy proposal show <url>` as thin API clients.
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6.**Delegate signing of hub-created changes.** A library entry point to build and sign a change from an edit set with `author = user key, signer = hub key`, without a workspace (used by web edits, browser conflict resolution and landings). `oxy identity delegate add|remove` already exists.
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7.**History for the hub.**`Repo::log_window(heads, cursor, limit)` for paginated history, and a `graph::layout` module shared with the CLI so both draw the same lanes.
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8.**Push hook.**`receive_push` reports, per accepted reference, the old and new state and the list of newly stored changes, for the pushes log and webhooks.
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9.**Machine interface.**`oxy verify --json` already exists; add `oxy policy propose` output as a downloadable proposal file (it exists as a file format, spec §14.5) and `oxy tag list --json` is already present.
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##19. Milestones
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|| Delivers | Done when |
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|---|---|---|
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|**0.1 Browse**| Data directory, config, SQLite, embedded wire server, repository creation by `oxy push`, theme and shell, overview, tree, file, raw, Markdown, history, change page, compare, bookmarks, tags, blame, conflicts page, trust page (read-only) |`oxygen`, `oxygen-vscode` and `oxygenhub` are hosted on Earth and browsable; `oxy clone` and `oxy push` work against it |
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|**0.2 Accounts and access**| Registration, sessions, TOTP, profile, organisations and teams, roles, visibility, tokens, linked identities with challenge, pushes log, settings pages, audit log | Pushes are attributed to linked keys; a private repository is invisible to outsiders |
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|**0.3 Proposals**| Proposals from bookmarks and forks, projected state, diff, conflicts, atom-anchored comments, reviews with seal-backed approvals, requirements, landing by delegate or client, stacking | A change proposed, reviewed with a comment that survives a rebase, sealed, and landed, all from the pages plus `oxy seal`|
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|**0.4 Issues and notifications**| Issues, labels, milestones, cross references, templates, inbox, email, watching, mentions, search over issues and proposals | — |
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|**0.5 API, webhooks, checks**|`/api/v1` complete for every page, `hub-api` crate, webhooks with delivery log, checks with seals, required checks, SSE status | The VS Code extension can list proposals and checks through the API |
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|**0.6 Web edits, releases, mirror**| CodeMirror editing and new file with delegate signing, browser conflict resolution, releases with assets and archives, Git mirror over smart HTTP, code search | A GitHub Actions job can clone a hosted repository over the mirror |
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|**0.7 Runner**|`docs/runner.md`, `oxyrun`, job-claim API, seals from the runner | A pipeline in `oxygen` builds and tests on Earth and its result appears as a required check |
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|**1.0**| Passkeys, backup and restore verified, load test at the §16.1 targets, security review of §15, documentation, packaged release (binary, container image, systemd unit) | — |
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##20. Open questions
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1.**Seal signing UX.** Requiring `oxy seal` from a client for every approval is honest but slower than a button. A browser-held signing key (WebAuthn `prf` extension deriving an Ed25519 key) could sign approvals in the browser with hardware backing; ML-DSA-65 in the browser is heavier. Decide after 0.3 ships with the client flow.
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2.**Delegate key custody.** One hub key delegated to by many users means one key whose compromise lets an attacker sign as any of them (still subject to policy and to each user's revocation). Per-user delegate keys held by the hub would narrow that blast radius at the cost of a key per user. Decide before 0.6.
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3.**Postgres.** SQLite is enough for one host; an organisation-scale hub may want Postgres. `sqlx` keeps the option open, but every query would need to be dialect-clean. Decide when someone needs it.
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4.**Comment anchoring for lines that are not atoms.** Comments on deleted lines and on binary files fall back to file anchors; is that good enough?
5.**Pipeline language.** KDL is the current choice for `.oxyhub/pipelines`; Starlark would give loops and functions at the cost of a real evaluator. Settle in `docs/runner.md`.